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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7008420_7009212_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7008420 - 7009212
Intron Length:
793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCATC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
CAAGTATCAATG
Flanking Amino Acid:
NNSKLEQYIEVIKSTEEFEK
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
76.2
39.9
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
82
0.72
0.7
80.4
24.9
Minor 5ss
42.5
-0.8
3.2
59.7
45.1
Minor BPS
40.9
-0.8
1.8
38.18
38.7

Associated Gene:

Gene:
ZW10
Ensembl Gene ID:
ENSAPLG00000010173
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010648
6999325 - 7015392
16068