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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7013647_7014196_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7013647 - 7014196
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTTTTTTCAATT
Flanking Amino Acid:
EIVTRIAALEDISAEDADRL
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.5
0.66
0.8
71.7
38.3
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
65.5
0.57
1.5
80.29
35.9

Associated Gene:

Gene:
ZW10
Ensembl Gene ID:
ENSAPLG00000010173
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010648
6999325 - 7015392
16068