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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7014400_7015271_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7014400 - 7015271
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
TTCTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
GTTTTGTTAAAT
Flanking Amino Acid:
LQANLQEIVDQWADGKGPLA
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
69.8
34.9
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
89.5
0.89
0.6
84.7
23
Minor 5ss
34
-1.8
3.4
49.1
41.3
Minor BPS
59.8
0.38
2.1
81.62
39.7

Associated Gene:

Gene:
ZW10
Ensembl Gene ID:
ENSAPLG00000010173
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010648
6999325 - 7015392
16068