About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7120624_7120877_R


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
7120624 - 7120877

Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGCAGTAC

5'SS Class:
major

3'SS Sequence:
GACCTCCTTGCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCCCGAC

U12 Branch Point Sequence:
AGCTCCCGACCT

Flanking Amino Acid:
QDPKQRPSFTDIPVETDMLL

Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
66.9
0.4
1.1
59.6
35.8

Major BPS
48.5
-0
1.3
46
38.7

Major PPT
73.1
0.52
0.9
65.5
35.7

Minor 5ss
29.9
-2.3
3.5
40.2
46.2

Minor BPS
46.1
-0.2
2
65.01
44.8

Associated Gene:

Gene:
ANKK1

Ensembl Gene ID:

Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7117262 - 7125359
8098