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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7122244_7122649_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7122244 - 7122649
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GGGGCTCTCATT
Flanking Amino Acid:
ILLDGNMHVKISDFGLSKWM
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
70.8
39.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
82.6
0.73
0.8
76.5
32.1
Minor 5ss
40.7
-1
3.1
57.7
46.5
Minor BPS
41.4
-0.6
2
53.42
42.5

Associated Gene:

Gene:
ANKK1
Ensembl Gene ID:
ENSAPLG00000023849
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023620
7117262 - 7125359
8098