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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7127536_7128009_R

Intron Information:

Intron Rank:
134477
Intron Class:
major
Intron Phase:
Intron Coordinates:
7127536 - 7128009
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
ACTTTATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
ATTACTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
75.1
0.62
1
65.6
41
Major PPT
82.7
0.74
0.8
73.9
40.1
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
63
0.49
1.6
78.87
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019641
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038432
7127040 - 7138120
11081