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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7145686_7146674_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7145686 - 7146674
Intron Length:
989

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ACTTTTTTGATT
Flanking Amino Acid:
GVLPVFTQLLTSAKMVNQAA
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
71.3
33.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
89.5
0.89
0.6
89
20.1
Minor 5ss
39
-1.2
2.8
45.4
44
Minor BPS
66.5
0.6
1.1
75.74
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008471
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008844
7139526 - 7156906
17381