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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7148779_7149850_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7148779 - 7149850
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAACAG
5'SS Class:
major
3'SS Sequence:
GCTCTGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTGCTCTTAGAT
Flanking Amino Acid:
LLWQAVCAGNEENQRLLLTH
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
57.6
41.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
77.1
0.61
0.9
72.8
37.5
Minor 5ss
30.8
-2.2
3.1
35.7
42.1
Minor BPS
56.5
0.28
1.7
74.5
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008471
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008844
7139526 - 7156906
17381