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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7151840_7151927_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7151840 - 7151927
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGACTGCCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTCTTTTGACT
Flanking Amino Acid:
IDPQKESLFKDCINEVNLEE
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
58.6
0.19
1.2
56.5
43.4
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
74.3
0.85
1.1
87.98
30.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008471
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008844
7139526 - 7156906
17381