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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7152783_7153735_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7152783 - 7153735
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTATCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AGTTTCTAAATA
Flanking Amino Acid:
AIGDCEWALKCSEKCIKAYF
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85
0.79
0.8
80.3
30.2
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
61.9
0.37
1.6
69.84
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008471
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008844
7139526 - 7156906
17381