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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7154763_7155265_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7154763 - 7155265
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTATTCTGAATG
Flanking Amino Acid:
RRKRNERLANALKEKGNDAF
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
79.2
34.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
82.9
0.74
0.9
76.6
37.7
Minor 5ss
35.8
-1.6
3.3
51.5
44.9
Minor BPS
65.6
0.35
1.5
68.83
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008471
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008844
7139526 - 7156906
17381