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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7155344_7155845_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7155344 - 7155845
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACAG
5'SS Class:
major
3'SS Sequence:
TTCTGTCTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
ATGCCACTAACT
Flanking Amino Acid:
DVSTAEAVNPDGFLAALEKD
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
62.5
43.8
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
69.8
0.44
1
70.4
34.1
Minor 5ss
29.9
-2.3
3.3
37.9
47
Minor BPS
52.2
0.15
2
74.46
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008471
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008844
7139526 - 7156906
17381