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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7155877_7156492_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7155877 - 7156492
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGGGCT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
TGTGCTGTATTT
Flanking Amino Acid:
NRTVINTRASDVSTAEAVNP
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
63.8
39.6
Major BPS
67.6
0.44
1.2
75
40
Major PPT
88.5
0.87
0.6
88.4
21.3
Minor 5ss
34.8
-1.7
3.7
57.8
46.4
Minor BPS
45.8
-0.2
2.2
67.71
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008471
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008844
7139526 - 7156906
17381