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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7156645_7156845_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7156645 - 7156845
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGAGGG
5'SS Class:
major
3'SS Sequence:
ATCCCTTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATTTCTTTATCC
Flanking Amino Acid:
QRFLRRVDDITNLLQDLNSP
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
54.9
42.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.9
0.65
0.8
77.1
30.8
Minor 5ss
32
-2.1
3.4
44
44.4
Minor BPS
72.7
0.69
1.5
80.59
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008471
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008844
7139526 - 7156906
17381