Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7169216_7171011_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7169216 - 7171011

Intron Length:

1796

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTATGTTGA

5'SS Class:

major

3'SS Sequence:

GTCCTCTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTCAT

U12 Branch Point Sequence:

TTCTCTTCTACT

Flanking Amino Acid:

PNETTPLTEPEHTADTAATV

Intron Amino Acid Position:

810

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.6

0.42

1.1

61.4

40.1

Major BPS

69.6

0.49

1.3

73.6

41.8

Major PPT

77.5

0.62

0.8

71.5

Minor 5ss

46.9

-0.3

2.4

53.7

44.7

Minor BPS

59.3

0.37

1.9

80.15

41.9

Associated Gene:

Gene:

NCAM1

Ensembl Gene ID:

ENSAPLG00000006972

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034074

7166006 - 7271052

105047

ENSAPLT00000007333

7166006 - 7271052

105047