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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7184086_7203456_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7184086 - 7203456
Intron Length:
19371

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTA|GCCAGCTTT
5'SS Class:
weak_major
3'SS Sequence:
ACTGCACTTCGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CCTTCTTACACT
Flanking Amino Acid:
EMQNIQHNVSSTWLGSPARW
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.8
0.14
1.3
61
43.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
49.3
-0
1.7
51.4
42.4
Minor 5ss
36.7
-1.5
4.2
58
41.7
Minor BPS
49.9
0.07
2.1
70.57
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028766
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041340
7183971 - 7203821
19851