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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7203595_7211462_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7203595 - 7211462
Intron Length:
7868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAGCA
5'SS Class:
major
3'SS Sequence:
CCTTTTCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GAGCCTCTGACT
Flanking Amino Acid:
STRNISNEEKTLDGRIVVRS
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
61.4
37.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
78.2
0.63
0.9
72.6
37.6
Minor 5ss
42.3
-0.8
3.2
57.2
47.1
Minor BPS
48.7
-0
1.7
63.14
40.8

Associated Gene:

Gene:
NCAM1
Ensembl Gene ID:
ENSAPLG00000006972
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007333
7166006 - 7271052
105047