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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7211606_7212148_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7211606 - 7212148
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATCC
Flanking Amino Acid:
QDATIHLKVFAKPKITYVEN
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.3
0.88
0.6
87.7
22.4
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
64.6
0.44
1.6
73.19
38.5

Associated Gene:

Gene:
NCAM1
Ensembl Gene ID:
ENSAPLG00000006972
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034074
7166006 - 7271052
105047
ENSAPLT00000007333
7166006 - 7271052
105047