Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7214283_7215021_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7214283 - 7215021

Intron Length:

739

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCC|GTAAGAGAG

5'SS Class:

major

3'SS Sequence:

CCATTGCTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAA

U12 Branch Point Sequence:

TCTCCTTCCATT

Flanking Amino Acid:

SEATVNVKIFQKLMFKNAPT

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.8

0.33

1.4

57.3

42.2

Major BPS

0.55

1.1

63.4

44.3

Major PPT

76.6

0.6

0.9

72.8

37.3

Minor 5ss

31.6

-2.1

3.4

42.9

44.4

Minor BPS

48.3

-0

1.9

69.06

42.6

Associated Gene:

Gene:

NCAM1

Ensembl Gene ID:

ENSAPLG00000006972

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034074

7166006 - 7271052

105047

ENSAPLT00000007333

7166006 - 7271052

105047