Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7216844_7271000_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7216844 - 7271000

Intron Length:

54157

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGCGG

5'SS Class:

major

3'SS Sequence:

CTTTCTTTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTAAC

U12 Branch Point Sequence:

GATTGTCTAACC

Flanking Amino Acid:

PWTLFLLRAAASLQVDIVPS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

55.4

48.8

Major BPS

66.8

0.42

1.2

69.6

35.5

Major PPT

91.3

0.93

0.6

84.1

30.8

Minor 5ss

29.1

-2.4

3.4

38.7

46.4

Minor BPS

49.6

-0

2.1

65.05

40.3

Associated Gene:

Gene:

NCAM1

Ensembl Gene ID:

ENSAPLG00000006972

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034074

7166006 - 7271052

105047

ENSAPLT00000007333

7166006 - 7271052

105047