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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7327568_7329523_R

Intron Information:

Intron Rank:
139596
Intron Class:
major
Intron Phase:
Intron Coordinates:
7327568 - 7329523
Intron Length:
1956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
81.5
31.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75
0.56
0.9
76.4
32.2
Minor 5ss
37.6
-1.4
3.3
48.9
41.5
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022565
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036005
7326918 - 7330804
3887