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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7330805_7338778_R

Intron Information:

Intron Rank:
139594
Intron Class:
major
Intron Phase:
Intron Coordinates:
7330805 - 7338778
Intron Length:
7974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTCTCAAGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
88.8
0.87
0.8
83.7
31.3
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
53.3
0.18
2
79.51
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022565
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025101
7328568 - 7349330
20763