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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7338895_7348710_R

Intron Information:

Intron Rank:
139595
Intron Class:
major
Intron Phase:
Intron Coordinates:
7338895 - 7348710
Intron Length:
9816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTAGA
5'SS Class:
major
3'SS Sequence:
CTCCACCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTCCTCTCCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
71.8
39.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
70.8
0.47
0.8
61.1
34.7
Minor 5ss
37.5
-1.4
2.4
43.5
43.5
Minor BPS
48.5
-0.1
2
63.43
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022565
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025101
7328568 - 7349330
20763