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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7375068_7378919_F

Intron Information:

Intron Rank:
147520
Intron Class:
major
Intron Phase:
Intron Coordinates:
7375068 - 7378919
Intron Length:
3852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
TTTGCCACTACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.7
34.8
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
85.2
0.79
0.7
76.8
31.9
Minor 5ss
39.4
-1.2
2.8
51.2
45.3
Minor BPS
45.6
-0.4
2.3
61.12
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029449
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034735
7375022 - 7379107
4086