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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7380033_7381398_F

Intron Information:

Intron Rank:
147519
Intron Class:
major
Intron Phase:
Intron Coordinates:
7380033 - 7381398
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TACATCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TTCCCATTTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
71.7
0.49
0.9
65
35.9
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
50.1
-0
1.9
66.01
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029449
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032258
7378607 - 7381669
3063