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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7550307_7551006_F

Intron Information:

Intron Rank:
148058
Intron Class:
major
Intron Phase:
Intron Coordinates:
7550307 - 7551006
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTC
5'SS Class:
major
3'SS Sequence:
CTTCCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CTTCCCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
81.1
0.7
0.7
75.4
26.6
Minor 5ss
35.4
-1.7
3.4
50.6
45.9
Minor BPS
67.2
0.54
1.8
76.69
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029712
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046461
7548482 - 7552649
4168