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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7559643_7559780_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7559643 - 7559780
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGCTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
CGGTTCTGAGCC
Flanking Amino Acid:
KDVPYFAEVVSTTENVAVFI
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
76.5
0.6
0.9
73.1
37.3
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
48.2
-0.1
1.7
55.45
42.8

Associated Gene:

Gene:
PTS
Ensembl Gene ID:
ENSAPLG00000006913
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007182
7559206 - 7563113
3908