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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7560222_7561143_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7560222 - 7561143
Intron Length:
922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GGCTACTAATCT
Flanking Amino Acid:
YKVIVTVRGEIDPVSGMVIN
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
84.1
0.77
0.8
78.1
30.7
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
45.7
-0.2
2.1
62.39
46.9

Associated Gene:

Gene:
PTS
Ensembl Gene ID:
ENSAPLG00000006913
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007182
7559206 - 7563113
3908