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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7561167_7562012_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7561167 - 7562012
Intron Length:
846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
NPNGHGHNYKVIVTVRGEID
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.9
38.6
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
32.6
-2
3.1
43
44.2
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
PTS
Ensembl Gene ID:
ENSAPLG00000006913
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007182
7559206 - 7563113
3908