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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7562093_7562631_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7562093 - 7562631
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCGCGGC
5'SS Class:
major
3'SS Sequence:
CTGCTTCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GAGTGCTGAAAT
Flanking Amino Acid:
VSFSACHRLHSKALSDEENL
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.3
1.4
55.4
43.2
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
74.6
0.55
0.8
69.2
31.4
Minor 5ss
31
-2.2
3.4
42.1
44.7
Minor BPS
48
-0
2
64.53
45

Associated Gene:

Gene:
PTS
Ensembl Gene ID:
ENSAPLG00000006913
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007182
7559206 - 7563113
3908