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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7568447_7569142_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7568447 - 7569142
Intron Length:
696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATACTTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
GCTCCTGTAATG
Flanking Amino Acid:
AKAVKDVDGKVWCTHENLHP
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
74.9
0.56
0.9
66.8
39.7
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
47.6
-0.3
2
52.88
42.6

Associated Gene:

Gene:
BCO2
Ensembl Gene ID:
ENSAPLG00000006142
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028415
7566105 - 7609990
43886
ENSAPLT00000019449
7566667 - 7613733
47067
ENSAPLT00000006393
7566105 - 7586919
20815