Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7569281_7571542_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7569281 - 7571542

Intron Length:

2262

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATCT

5'SS Class:

strong_major

3'SS Sequence:

GGCTTTGTAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

ATCACTGTAACT

Flanking Amino Acid:

MRRSGVDLYQVYNSVARTFP

Intron Amino Acid Position:

398

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.8

84.2

27.2

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

62.6

0.28

57.9

42.1

Minor 5ss

40.6

-1.1

3.1

57.4

46.8

Minor BPS

54.8

0.23

2.1

74.63

42.4

Associated Gene:

Gene:

BCO2

Ensembl Gene ID:

ENSAPLG00000006142

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028415

7566105 - 7609990

43886

ENSAPLT00000019449

7566667 - 7613733

47067

ENSAPLT00000006393

7566105 - 7586919

20815