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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7571711_7572262_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7571711 - 7572262
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATGGTCACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTCTCTTATTA
Flanking Amino Acid:
FHVVNKHTGEVLPGQWYSKP
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
32.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
63.8
0.31
1
56.7
39.3
Minor 5ss
35.9
-1.6
3.5
51.5
45.7
Minor BPS
59.3
0.29
1.6
67.92
39.1

Associated Gene:

Gene:
BCO2
Ensembl Gene ID:
ENSAPLG00000006142
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028415
7566105 - 7609990
43886
ENSAPLT00000019449
7566667 - 7613733
47067
ENSAPLT00000006393
7566105 - 7586919
20815