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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7572690_7573876_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7572690 - 7573876
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TGGTGTTGAATA
Flanking Amino Acid:
YNMGNSYGKHGTRYNIIEIP
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
68.2
42.8
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
91.3
0.93
0.6
84.4
30.6
Minor 5ss
35.7
-1.6
3.2
45.4
43.6
Minor BPS
49
-0
1.9
60.44
40.2

Associated Gene:

Gene:
BCO2
Ensembl Gene ID:
ENSAPLG00000006142
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028415
7566105 - 7609990
43886
ENSAPLT00000019449
7566667 - 7613733
47067
ENSAPLT00000006393
7566105 - 7586919
20815