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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7578125_7579233_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7578125 - 7579233
Intron Length:
1109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCTAT
U12 Branch Point Sequence:
GTTCTCCTATTT
Flanking Amino Acid:
GPGRFEFGEEKYNHWFDGMA
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
56.4
0.16
1.3
56.1
41.3
Major PPT
75.7
0.58
0.9
69.8
36.6
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
48.6
-0
1.9
70.65
40.3

Associated Gene:

Gene:
BCO2
Ensembl Gene ID:
ENSAPLG00000006142
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028415
7566105 - 7609990
43886
ENSAPLT00000019449
7566667 - 7613733
47067
ENSAPLT00000006393
7566105 - 7586919
20815