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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7596935_7599591_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7596935 - 7599591
Intron Length:
2657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTGTTCCTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
70.5
38.9
Major BPS
72
0.55
1
71.8
31.4
Major PPT
82.6
0.73
1
80.6
37
Minor 5ss
29.5
-2.3
3.4
38.5
46.7
Minor BPS
68.6
0.56
1.7
78.65
36.8

Associated Gene:

Gene:
IL18
Ensembl Gene ID:
ENSAPLG00000005942
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006193
7596564 - 7602000
5437