Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7599666_7601130_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7599666 - 7601130

Intron Length:

1465

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAATGATT

5'SS Class:

major

3'SS Sequence:

ATATTTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

CTTTGCTTAATA

Flanking Amino Acid:

LGENLCLYFAELECDAFSKE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

77.1

37.4

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

83.1

0.75

0.8

35.6

Minor 5ss

38.4

-1.3

3.4

54.6

43.8

Minor BPS

70.5

0.64

1.8

78.78

38.5

Associated Gene:

Gene:

IL18

Ensembl Gene ID:

ENSAPLG00000005942

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006193

7596564 - 7602000

5437