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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7607875_7609129_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7607875 - 7609129
Intron Length:
1255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGTCCC
5'SS Class:
major
3'SS Sequence:
CTTCACCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
CAGTCCTTCACC
Flanking Amino Acid:
SGGATGSRVTAAPRLRPCTG
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
61.2
43.7
Major BPS
64.9
0.37
1
67
29.8
Major PPT
80.2
0.68
0.8
73.3
31.2
Minor 5ss
34.9
-1.7
3.1
46.2
41.9
Minor BPS
62.3
0.37
1.8
67.17
44.4

Associated Gene:

Gene:
BCO2
Ensembl Gene ID:
ENSAPLG00000006142
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028415
7566105 - 7609990
43886