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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7612572_7613632_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7612572 - 7613632
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCACC
5'SS Class:
major
3'SS Sequence:
TCTCTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
TGAAGGACAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65.8
40.2
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
88.6
0.87
0.6
84.3
23.6
Minor 5ss
33.8
-1.8
3.1
43.2
44.2
Minor BPS
36.1
-0.9
2.5
55.99
45.3

Associated Gene:

Gene:
BCO2
Ensembl Gene ID:
ENSAPLG00000006142
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019449
7566667 - 7613733
47067