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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7619886_7620038_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7619886 - 7620038
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTTTCTGTGAAT
Flanking Amino Acid:
EGKLQPHEFQGGTFTISNLG
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
78.2
31.2
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
85.8
0.81
0.7
81.6
30.5
Minor 5ss
27.1
-2.6
3
33
42.4
Minor BPS
57.7
0.32
2.1
83.91
37.2

Associated Gene:

Gene:
DLAT
Ensembl Gene ID:
ENSAPLG00000005443
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005656
7616992 - 7625880
8889