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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7621130_7621220_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7621130 - 7621220
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAAGA
5'SS Class:
major
3'SS Sequence:
TGTGTACCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
ATTTCTGTCATT
Flanking Amino Acid:
TDIPISNIRRVIAQRLMQSK
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.8
39.3
Major BPS
71.6
0.54
1
72
33.1
Major PPT
70
0.45
0.9
62.3
38.9
Minor 5ss
27
-2.6
2.7
23.2
36.9
Minor BPS
49.6
0.05
2.3
77.48
40

Associated Gene:

Gene:
DLAT
Ensembl Gene ID:
ENSAPLG00000005443
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005656
7616992 - 7625880
8889