About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7621314_7621604_R


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
7621314 - 7621604

Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CCA|GTGAGTAGG

5'SS Class:
major

3'SS Sequence:
TCTCTGGTTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTGTGAA

U12 Branch Point Sequence:
GTCCTGTGAACT

Flanking Amino Acid:
ESFVPPKVAPAPAAEAVPAA

Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.1
0.5
1
62.8
43.3

Major BPS
59.7
0.24
1.2
52.7
43.2

Major PPT
78.4
0.64
0.9
72.2
37.8

Minor 5ss
31.9
-2.1
2.7
39
40.1

Minor BPS
47.1
-0.1
2.1
66.64
43.8

Associated Gene:

Gene:
DLAT

Ensembl Gene ID:

Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7616992 - 7625880
8889