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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7621673_7621891_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7621673 - 7621891
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGC
5'SS Class:
major
3'SS Sequence:
TTGATGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTCCTTTGATG
Flanking Amino Acid:
EKGIDLAQVKGTGPDGRITK
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.2
39.2
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
73.3
0.52
0.9
70.3
41.2
Minor 5ss
36.4
-1.5
3.4
50.2
46.4
Minor BPS
68.8
0.45
1.3
71.69
35.4

Associated Gene:

Gene:
DLAT
Ensembl Gene ID:
ENSAPLG00000005443
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005656
7616992 - 7625880
8889