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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7624406_7624529_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7624406 - 7624529
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCATTAT
U12 Branch Point Sequence:
TGGCCATTATGT
Flanking Amino Acid:
IGAIICITVEKPEHVDAFKN
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
84.6
33.2
Major BPS
59.8
0.24
1.2
51.6
42.3
Major PPT
89.6
0.89
0.6
84.8
30
Minor 5ss
42
-0.9
3.2
59.7
39.1
Minor BPS
45.3
-0.2
2.1
63.5
46.1

Associated Gene:

Gene:
DLAT
Ensembl Gene ID:
ENSAPLG00000005443
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005656
7616992 - 7625880
8889