About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7624655_7624981_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7624655 - 7624981
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTCTGA
5'SS Class:
major
3'SS Sequence:
TTCTCTCTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTGCTCTAACA
Flanking Amino Acid:
KIGEGELIAEVETDKATVGF
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
60.5
40.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
72.9
0.52
1
74.3
28.3
Minor 5ss
49.4
-0
2.5
65.4
45.8
Minor BPS
65.8
0.49
1.8
79.78
36.5

Associated Gene:

Gene:
DLAT
Ensembl Gene ID:
ENSAPLG00000005443
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005656
7616992 - 7625880
8889