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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_76291_76393_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
76291 - 76393
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGCTGG
5'SS Class:
major
3'SS Sequence:
TTTCCTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ACTCTATTCACA
Flanking Amino Acid:
DKKRAALRWEVLNNSENLLC
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.9
44.8
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
85.8
0.8
0.7
77.7
31
Minor 5ss
36.7
-1.5
3.2
46.9
48.5
Minor BPS
47.1
-0.2
2
59.85
39.9

Associated Gene:

Gene:
HYLS1
Ensembl Gene ID:
ENSAPLG00000000881
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024842
76046 - 81705
5660