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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7633468_7633557_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7633468 - 7633557
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGATC
5'SS Class:
strong_major
3'SS Sequence:
GTTCCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAAAAAT
U12 Branch Point Sequence:
ATAAGGTTAACT
Flanking Amino Acid:
RQLSEASYQQVDLERELEHK
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
78.6
35.4
Major BPS
50.5
0.01
1.1
57.3
34.4
Major PPT
84
0.76
0.8
80.8
31.1
Minor 5ss
42.9
-0.8
3.1
59.7
45.1
Minor BPS
48.3
-0
2.4
72.07
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005002
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029902
7633189 - 7665006
31818
ENSAPLT00000044341
7633189 - 7653773
20585
ENSAPLT00000023654
7633189 - 7643577
10389
ENSAPLT00000040602
7627058 - 7651201
24144
ENSAPLT00000005182
7629463 - 7661721
32259
ENSAPLT00000039488
7633189 - 7662502
29314
ENSAPLT00000032180
7629463 - 7661721
32259
ENSAPLT00000046457
7633189 - 7654658
21470