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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7634239_7634757_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7634239 - 7634757
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTCAC
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
TCACACCTATCT
Flanking Amino Acid:
MDKEELHNQNVDLQRKVEER
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
70.4
35.5
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
93.2
0.97
0.6
89.1
19.8
Minor 5ss
31.5
-2.1
2.9
40.1
38.9
Minor BPS
45.2
-0.2
2
64.45
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005002
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032180
7629463 - 7661721
32259
ENSAPLT00000046457
7633189 - 7654658
21470
ENSAPLT00000029902
7633189 - 7665006
31818
ENSAPLT00000044341
7633189 - 7653773
20585
ENSAPLT00000023654
7633189 - 7643577
10389
ENSAPLT00000040602
7627058 - 7651201
24144
ENSAPLT00000005182
7629463 - 7661721
32259
ENSAPLT00000039488
7633189 - 7662502
29314