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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7634863_7635946_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7634863 - 7635946
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
TTTTCCTATAGA
Flanking Amino Acid:
QEARNLQGIKDALQQRLAQQ
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
71.4
0.53
1
67
39.8
Major PPT
79.4
0.66
0.8
73
37.3
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
53.7
0.11
2.3
75.18
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005002
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044341
7633189 - 7653773
20585
ENSAPLT00000039488
7633189 - 7662502
29314
ENSAPLT00000029902
7633189 - 7665006
31818
ENSAPLT00000023654
7633189 - 7643577
10389
ENSAPLT00000046457
7633189 - 7654658
21470