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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_7634863_7637028_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7634863 - 7637028
Intron Length:
2166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
TGTCTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAT
U12 Branch Point Sequence:
TTTTCCTATAGA
Flanking Amino Acid:
EHGACPEEQLDALQQRLAQQ
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
69.4
36.6
Major BPS
71.4
0.53
1
67
39.8
Major PPT
79.4
0.66
0.8
73
37.3
Minor 5ss
34.4
-1.8
2.8
37.9
40.9
Minor BPS
53.7
0.11
2.3
75.18
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005002
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032180
7629463 - 7661721
32259